A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16046235



Internal ID19771489
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:45420448..45420449hg38UCSC Ensembl
chr3:45461940..45461941hg19UCSC Ensembl
Cytoband3p21.31
Allele length
AssemblyAllele length
hg385806
hg195806
Variant TypeCNV line1 insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4557571
Supporting Variants
Samples
Known GenesLARS2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16046235
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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