A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16039917



Internal ID19765171
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:105279603..105279604hg38UCSC Ensembl
chr2:105896060..105896061hg19UCSC Ensembl
Cytoband2q12.1
Allele length
AssemblyAllele length
hg38125
hg19125
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4537616
Supporting Variants
Samples
Known GenesTGFBRAP1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16039917
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.104244


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