A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16028618



Internal ID19753872
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:20746601..20746602hg38UCSC Ensembl
chr1:21073094..21073095hg19UCSC Ensembl
Cytoband1p36.12
Allele length
AssemblyAllele length
hg38235
hg19235
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4559393
Supporting Variants
Samples
Known GenesHP1BP3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16028618
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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