A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16024433



Internal ID19749687
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:89118560..89118561hg38UCSC Ensembl
chr1:89584243..89584244hg19UCSC Ensembl
Cytoband1p22.2
Allele length
AssemblyAllele length
hg38976
hg19976
Variant TypeCNV line1 insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4567638
Supporting Variants
Samples
Known GenesGBP2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16024433
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.003784


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