A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16023184



Internal ID19748438
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:40728735..40728736hg38UCSC Ensembl
chr19:41234640..41234641hg19UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg381140
hg191140
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4577871
Supporting Variants
Samples
Known GenesITPKC
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16023184
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer