A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16003412



Internal ID19728666
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:109940583..109940584hg38UCSC Ensembl
chr12:110378388..110378389hg19UCSC Ensembl
Cytoband12q24.11
Allele length
AssemblyAllele length
hg38187
hg19187
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4502227
Supporting Variants
Samples
Known GenesGIT2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16003412
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000092


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