A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16002381



Internal ID20074337
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:53105801..53105802hg38UCSC Ensembl
chr12:53499585..53499586hg19UCSC Ensembl
Cytoband12q13.13
Allele length
AssemblyAllele length
hg3851
hg1951
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4549839
Supporting Variants
Samples
Known GenesSOAT2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv16002381
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.324221


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