A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16001658



Internal ID19726912
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:43768609..43768610hg38UCSC Ensembl
chr12:44162412..44162413hg19UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg383012
hg193012
Variant TypeCNV line1 insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4557968
Supporting Variants
Samples
Known GenesIRAK4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16001658
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000553


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