A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15999288



Internal ID20071244
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:18730936..18730937hg38UCSC Ensembl
chr12:18883870..18883871hg19UCSC Ensembl
Cytoband12p12.3
Allele length
AssemblyAllele length
hg38218
hg19218
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4508850
Supporting Variants
Samples
Known GenesPLCZ1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15999288
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000184


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer