A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15990508



Internal ID20062451
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrY:25164853..25228853hg38UCSC Ensembl
chrY:27311000..27375000hg19UCSC Ensembl
CytobandYq11.23
Allele length
AssemblyAllele length
hg3864001
hg1964001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4033426
Supporting Variants
Samples
Known GenesTTTY17A, TTTY17B, TTTY17C
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15990508
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.02735


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