A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15990453



Internal ID19715707
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:154601751..154630752hg38UCSC Ensembl
chrX:153830000..153859000hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg3829002
hg1929001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4041165
Supporting Variants
Samples
Known GenesCTAG1A, CTAG1B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15990453
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000836


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