A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15990165



Internal ID19715419
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrY:14563719..15189120hg38UCSC Ensembl
chrY:16675599..17301000hg19UCSC Ensembl
CytobandYq11.221
Allele length
AssemblyAllele length
hg38625402
hg19625402
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4516977
Supporting Variants
Samples
Known GenesNLGN4Y, NLGN4Y-AS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15990165
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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