A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15990048



Internal ID19715302
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:152264628..152792556hg38UCSC Ensembl
chrX:151433100..151961100hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg38527929
hg19528001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4037781
Supporting Variants
Samples
Known GenesCSAG1, CSAG2, CSAG3, CSAG4, GABRA3, GABRQ, MAGEA12, MAGEA2, MAGEA2B, MAGEA3, MAGEA6, MIR105-1, MIR105-2, MIR767
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15990048
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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