A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15990023



Internal ID20061966
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:149648277..149702882hg38UCSC Ensembl
chrX:148729946..148784542hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg3854606
hg1954597
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4051358
Supporting Variants
Samples
Known GenesMAGEA11
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15990023
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000285


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