A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15988148



Internal ID19713402
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:39100746..39857746hg38UCSC Ensembl
chrX:38959999..39717000hg19UCSC Ensembl
CytobandXp11.4
Allele length
AssemblyAllele length
hg38757001
hg19757002
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4516846
Supporting Variants
Samples
Known GenesLOC286442
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15988148
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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