A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15980773



Internal ID19706027
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:16798427..17711088hg38UCSC Ensembl
chr7:16838051..17750712hg19UCSC Ensembl
Cytoband7p21.1
Allele length
AssemblyAllele length
hg38912662
hg19912662
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4525486
Supporting Variants
Samples
Known GenesAGR2, AGR3, AHR
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15980773
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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