A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15980636



Internal ID19705890
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:5133905..5264640hg38UCSC Ensembl
chr7:5173536..5304271hg19UCSC Ensembl
Cytoband7p22.1
Allele length
AssemblyAllele length
hg38130736
hg19130736
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4146466
Supporting Variants
Samples
Known GenesWIPI2, ZNF890P
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15980636
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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