A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15980218



Internal ID19705472
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:168024540..168569038hg38UCSC Ensembl
chr6:168425220..168969718hg19UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg38544499
hg19544499
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4147969
Supporting Variants
Samples
Known GenesDACT2, FRMD1, KIF25, SMOC2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15980218
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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