A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15977904



Internal ID20049844
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:1275302..1329575hg38UCSC Ensembl
chr6:1275537..1329810hg19UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg3854274
hg1954274
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4131858
Supporting Variants
Samples
Known GenesFOXQ1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15977904
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000092


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