A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15977429



Internal ID20049369
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:82824388..82954435hg38UCSC Ensembl
chr5:82120207..82250254hg19UCSC Ensembl
Cytoband5q14.2
Allele length
AssemblyAllele length
hg38130048
hg19130048
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4120848
Supporting Variants
Samples
Known GenesLOC102546175, MIR3977
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15977429
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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