A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15976467



Internal ID20048407
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:138134332..138137509hg38UCSC Ensembl
chr5:137470021..137473198hg19UCSC Ensembl
Cytoband5q31.2
Allele length
AssemblyAllele length
hg383178
hg193178
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4125130
Supporting Variants
Samples
Known GenesNME5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15976467
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer