A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15975646



Internal ID19700900
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:101325335..101435848hg38UCSC Ensembl
chr4:102246492..102357005hg19UCSC Ensembl
Cytoband4q24
Allele length
AssemblyAllele length
hg38110514
hg19110514
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4096491
Supporting Variants
Samples
Known GenesFLJ20021, PPP3CA
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15975646
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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