A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15975603



Internal ID20047543
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:98489773..98491886hg38UCSC Ensembl
chr4:99410924..99413037hg19UCSC Ensembl
Cytoband4q23
Allele length
AssemblyAllele length
hg382114
hg192114
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4101881
Supporting Variants
Samples
Known GenesTSPAN5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15975603
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.004104


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