A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15975422



Internal ID19700676
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:179676530..180665516hg38UCSC Ensembl
chr5:179103531..180092516hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38988987
hg19988986
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4125210
Supporting Variants
Samples
Known GenesC5orf45, CANX, CBY3, CNOT6, FLT4, GFPT2, LTC4S, MAML1, MAPK9, MGAT4B, MIR1229, MIR340, MIR6165, RASGEF1C, RNF130, SCGB3A1, SQSTM1, TBC1D9B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15975422
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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