A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15975411



Internal ID19700665
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:179533709..179601599hg38UCSC Ensembl
chr5:178960710..179028600hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg3867891
hg1967891
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4117195
Supporting Variants
Samples
Known GenesRUFY1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15975411
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000138


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