A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15973444



Internal ID20045384
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:38995614..39001153hg38UCSC Ensembl
chr4:38997234..39002773hg19UCSC Ensembl
Cytoband4p14
Allele length
AssemblyAllele length
hg385540
hg195540
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4103242
Supporting Variants
Samples
Known GenesTMEM156
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15973444
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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