A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15973



Internal ID15833460
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32520531..32528580hg38UCSC Ensembl
Outerchr6:32520177..32529168hg38UCSC Ensembl
Innerchr6:32488308..32496357hg19UCSC Ensembl
Outerchr6:32487954..32496945hg19UCSC Ensembl
Innerchr6:32596286..32604335hg18UCSC Ensembl
Outerchr6:32595932..32604923hg18UCSC Ensembl
Innerchr6:32596286..32604335hg17UCSC Ensembl
Outerchr6:32595932..32604923hg17UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg388992
hg198992
hg188992
hg178992
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv7883
Supporting Variants
SamplesNA18504
Known GenesHLA-DRB5
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv15973
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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