A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15972212



Internal ID19697466
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:126441952..126967989hg38UCSC Ensembl
chr3:126160795..126686832hg19UCSC Ensembl
Cytoband3q21.3
Allele length
AssemblyAllele length
hg38526038
hg19526038
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4082024
Supporting Variants
Samples
Known GenesC3orf22, CHCHD6, CHST13, NUP210P1, TXNRD3, TXNRD3NB, UROC1, ZXDC
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15972212
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000092


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