A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15971075



Internal ID19696329
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:200545379..200774402hg38UCSC Ensembl
chr2:201410102..201639125hg19UCSC Ensembl
Cytoband2q33.1
Allele length
AssemblyAllele length
hg38229024
hg19229024
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4518538
Supporting Variants
Samples
Known GenesAOX1, AOX2P, LOC100507140, SGOL2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15971075
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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