A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15970592



Internal ID19695846
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:15293198..15621636hg38UCSC Ensembl
chr3:15334705..15663143hg19UCSC Ensembl
Cytoband3p25.1
Allele length
AssemblyAllele length
hg38328439
hg19328439
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4091702
Supporting Variants
Samples
Known GenesBTD, COLQ, EAF1, HACL1, METTL6, MIR4270, SH3BP5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15970592
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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