A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15970559



Internal ID19695813
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:197825599..198024360hg38UCSC Ensembl
chr3:197552470..197751231hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38198762
hg19198762
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4106074
Supporting Variants
Samples
Known GenesIQCG, LMLN, LRCH3, RPL35A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15970559
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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