A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15969837



Internal ID19695091
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:170230495..170234218hg38UCSC Ensembl
chr3:169948283..169952006hg19UCSC Ensembl
Cytoband3q26.2
Allele length
AssemblyAllele length
hg383724
hg193724
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4097042
Supporting Variants
Samples
Known GenesPRKCI
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15969837
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.022853


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer