A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15969120



Internal ID19694374
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:233835434..233843297hg38UCSC Ensembl
chr2:234744080..234751943hg19UCSC Ensembl
Cytoband2q37.1
Allele length
AssemblyAllele length
hg387864
hg197864
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4076349
Supporting Variants
Samples
Known GenesHJURP
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15969120
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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