A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15968499



Internal ID20040439
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:69364866..69365400hg38UCSC Ensembl
chr2:69591998..69592532hg19UCSC Ensembl
Cytoband2p13.3
Allele length
AssemblyAllele length
hg38535
hg19535
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4060310
Supporting Variants
Samples
Known GenesGFPT1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15968499
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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