A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15967921



Internal ID19693175
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:39037671..39074502hg38UCSC Ensembl
chr22:39433676..39470507hg19UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg3836832
hg1936832
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4278556
Supporting Variants
Samples
Known GenesAPOBEC3F
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15967921
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000138


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