A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15965156



Internal ID19690413
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:245638079..246488865hg38UCSC Ensembl
chr1:245801381..246652167hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg38850787
hg19850787
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4071065
Supporting Variants
Samples
Known GenesKIF26B, SMYD3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15965156
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer