A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15965043



Internal ID19690300
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr21:34528166..34777417hg38UCSC Ensembl
chr21:35900464..36149714hg19UCSC Ensembl
Cytoband21q22.12
Allele length
AssemblyAllele length
hg38249252
hg19249251
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4275187
Supporting Variants
Samples
Known GenesCLIC6, LINC00160, LOC100506385, RCAN1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15965043
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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