A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15964686



Internal ID20036629
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:232383282..232405132hg38UCSC Ensembl
chr1:232519028..232540878hg19UCSC Ensembl
Cytoband1q42.2
Allele length
AssemblyAllele length
hg3821851
hg1921851
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4062065
Supporting Variants
Samples
Known GenesSIPA1L2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15964686
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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