A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15964376



Internal ID19689632
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:46669657..46755208hg38UCSC Ensembl
chr20:45298296..45383847hg19UCSC Ensembl
Cytoband20q13.12
Allele length
AssemblyAllele length
hg3885552
hg1985552
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4282578
Supporting Variants
Samples
Known GenesSLC13A3, SLC2A10, TP53RK
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15964376
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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