A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15963619



Internal ID19688874
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:182572449..182631870hg38UCSC Ensembl
chr1:182541584..182601005hg19UCSC Ensembl
Cytoband1q25.3
Allele length
AssemblyAllele length
hg3859422
hg1959422
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4062270
Supporting Variants
Samples
Known GenesLOC284648, RGS16, RNASEL
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15963619
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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