A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15963483



Internal ID19688738
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:73691661..74487998hg38UCSC Ensembl
chr1:74157344..74953682hg19UCSC Ensembl
Cytoband1p31.1
Allele length
AssemblyAllele length
hg38796338
hg19796339
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4051173
Supporting Variants
Samples
Known GenesFPGT, FPGT-TNNI3K, LRRIQ3, TNNI3K
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15963483
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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