A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15963408



Internal ID19688663
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:175460980..175792704hg38UCSC Ensembl
chr1:175430116..175761840hg19UCSC Ensembl
Cytoband1q25.1
Allele length
AssemblyAllele length
hg38331725
hg19331725
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4070466
Supporting Variants
Samples
Known GenesTNR
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15963408
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000277


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