A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15963355



Internal ID19688610
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:153495031..153601114hg38UCSC Ensembl
chr1:153467507..153573590hg19UCSC Ensembl
Cytoband1q21.3
Allele length
AssemblyAllele length
hg38106084
hg19106084
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4070119
Supporting Variants
Samples
Known GenesS100A2, S100A3, S100A4, S100A5, S100A6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15963355
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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