A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15962651



Internal ID19687905
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:102690443..103319442hg38UCSC Ensembl
chr1:103155999..103785000hg19UCSC Ensembl
Cytoband1p21.1
Allele length
AssemblyAllele length
hg38629000
hg19629002
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4517797
Supporting Variants
Samples
Known GenesCOL11A1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15962651
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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