A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15962510



Internal ID19687764
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:54158262..54163768hg38UCSC Ensembl
chr19:54662000..54667500hg19UCSC Ensembl
Cytoband19q13.42
Allele length
AssemblyAllele length
hg385507
hg195501
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4262831
Supporting Variants
Samples
Known GenesLENG1, TMC4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15962510
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.006144


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