A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15962244



Internal ID20034184
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:11307249..11308769hg38UCSC Ensembl
chr19:11417925..11419445hg19UCSC Ensembl
Cytoband19p13.2
Allele length
AssemblyAllele length
hg381521
hg191521
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4271628
Supporting Variants
Samples
Known GenesTSPAN16
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15962244
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.00023


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