A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15961930



Internal ID19687184
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:108824005..108886455hg38UCSC Ensembl
chr1:109366627..109429077hg19UCSC Ensembl
Cytoband1p13.3
Allele length
AssemblyAllele length
hg3862451
hg1962451
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4054467
Supporting Variants
Samples
Known GenesAKNAD1, GPSM2, SPATA42
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15961930
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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