A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15961601



Internal ID19686855
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:35738099..35751099hg38UCSC Ensembl
chr19:36229000..36242000hg19UCSC Ensembl
Cytoband19q13.12
Allele length
AssemblyAllele length
hg3813001
hg1913001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4255747
Supporting Variants
Samples
Known GenesIGFLR1, KMT2B, LIN37, PSENEN, U2AF1L4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15961601
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.003747


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