A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15958359



Internal ID19683613
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:79998021..80268196hg38UCSC Ensembl
chr17:77971820..78241995hg19UCSC Ensembl
Cytoband17q25.3
Allele length
AssemblyAllele length
hg38270176
hg19270176
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4257071
Supporting Variants
Samples
Known GenesCARD14, CCDC40, EIF4A3, GAA, RNF213, SGSH, SLC26A11, TBC1D16
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15958359
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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