A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15956427



Internal ID19681681
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:41513093..41528458hg38UCSC Ensembl
chr15:41805291..41820656hg19UCSC Ensembl
Cytoband15q15.1
Allele length
AssemblyAllele length
hg3815366
hg1915366
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4243352
Supporting Variants
Samples
Known GenesLTK, RPAP1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15956427
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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